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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140569812_140570765_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140569812 - 140570765
Intron Length:
954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GATTATTTAAAT
Flanking Amino Acid:
IPNLIEYIKQNIDSLMTPDG
Intron Amino Acid Position:
926

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1.1
84.4
27.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82.1
0.72
1
86.9
31.1
Minor 5ss
31.4
-2.1
2.4
34
41.4
Minor BPS
62.5
0.47
1.6
76.66
39.1

Associated Gene:

Gene:
VIRMA
Ensembl Gene ID:
ENSAPLG00000014267
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022727
140558001 - 140575428
17428
ENSAPLT00000014889
140558001 - 140581596
23596
ENSAPLT00000035201
140558001 - 140581596
23596
ENSAPLT00000027878
140558001 - 140581596
23596
ENSAPLT00000025096
140558001 - 140581596
23596