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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140570860_140571005_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140570860 - 140571005
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTGTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACACAG
U12 Branch Point Sequence:
TCTTTCTGTACA
Flanking Amino Acid:
HVACPPPMVEGQQKDLKWNL
Intron Amino Acid Position:
957

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
73.6
33
Major BPS
48.4
-0.1
1.5
61
37.5
Major PPT
84.1
0.77
0.8
79.7
32.4
Minor 5ss
42.1
-0.9
3.1
54.8
49.4
Minor BPS
58.1
0.25
1.8
71.49
40.4

Associated Gene:

Gene:
VIRMA
Ensembl Gene ID:
ENSAPLG00000014267
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027878
140558001 - 140581596
23596
ENSAPLT00000025096
140558001 - 140581596
23596
ENSAPLT00000014889
140558001 - 140581596
23596
ENSAPLT00000035201
140558001 - 140581596
23596