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Intron Name: Anas_platyrhynchos_platyrhynchos_2_140570860_140575402_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

140570860 - 140575402

Intron Length:

4543

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGGTAA

5'SS Class:

strong_major

3'SS Sequence:

AAATGAGATCCAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AATTAAA

U12 Branch Point Sequence:

GAGAATTAAAAT

Flanking Amino Acid:

HVACPPPMVEVLVSFPFE*

Intron Amino Acid Position:

980

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

0.9

73.6

Major BPS

73.8

0.59

0.9

26.8

Major PPT

52.9

0.07

1.1

46.7

Minor 5ss

42.1

-0.9

3.1

54.8

49.4

Minor BPS

42.4

-0.5

1.8

41.4

Associated Gene:

Gene:

VIRMA

Ensembl Gene ID:

ENSAPLG00000014267

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022727

140558001 - 140575428

17428