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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140572346_140573112_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140572346 - 140573112
Intron Length:
767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTTGG
5'SS Class:
major
3'SS Sequence:
GATATCCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTTTTCCTATGT
Flanking Amino Acid:
VLDLIVEDLQSNTEDKEKQY
Intron Amino Acid Position:
1217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
64.2
42.4
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
75.2
0.57
0.9
70.4
40.8
Minor 5ss
45.8
-0.4
2.5
58.8
45.7
Minor BPS
50.9
0.11
2.2
80
42.1

Associated Gene:

Gene:
VIRMA
Ensembl Gene ID:
ENSAPLG00000014267
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027878
140558001 - 140581596
23596
ENSAPLT00000025096
140558001 - 140581596
23596
ENSAPLT00000014889
140558001 - 140581596
23596
ENSAPLT00000035201
140558001 - 140581596
23596