About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140576469_140577277_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140576469 - 140577277
Intron Length:
809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCATGTTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
CTCTACTTATTT
Flanking Amino Acid:
MRQLLNSDTLGCCGDDGSLM
Intron Amino Acid Position:
1419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.2
35.9
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
78.2
0.63
0.9
69.4
41.5
Minor 5ss
26.7
-2.7
3
27.9
37.8
Minor BPS
55.8
0.26
1.8
72.33
45

Associated Gene:

Gene:
VIRMA
Ensembl Gene ID:
ENSAPLG00000014267
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025096
140558001 - 140581596
23596
ENSAPLT00000014889
140558001 - 140581596
23596
ENSAPLT00000035201
140558001 - 140581596
23596