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Intron Name: Anas_platyrhynchos_platyrhynchos_2_140578327_140579278_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

140578327 - 140579278

Intron Length:

952

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGGGGC

5'SS Class:

strong_major

3'SS Sequence:

TCTGTTACTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTGAT

U12 Branch Point Sequence:

TTGTGATAAAAC

Flanking Amino Acid:

AEEIETDLDMVKVDLIELSE

Intron Amino Acid Position:

1556

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

66.2

39.3

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

79.9

0.67

0.9

74.1

35.3

Minor 5ss

29.7

-2.3

3.5

37.8

42.4

Minor BPS

44.3

-0.4

2.3

60.53

44.4

Associated Gene:

Gene:

VIRMA

Ensembl Gene ID:

ENSAPLG00000014267

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027878

140558001 - 140581596

23596

ENSAPLT00000025096

140558001 - 140581596

23596

ENSAPLT00000014889

140558001 - 140581596

23596

ENSAPLT00000035201

140558001 - 140581596

23596