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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140579935_140580842_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140579935 - 140580842
Intron Length:
908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCCCCATATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAA
U12 Branch Point Sequence:
CTCCCCATATCT
Flanking Amino Acid:
NRFFTPPASKGNYSRREGAR
Intron Amino Acid Position:
1722

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
79
37.9
Major BPS
70.6
0.51
1.1
71.6
36.4
Major PPT
66.6
0.37
0.9
58.5
36.4
Minor 5ss
42.7
-0.8
3
57.9
46.7
Minor BPS
49.7
0.06
2
70.26
46.2

Associated Gene:

Gene:
VIRMA
Ensembl Gene ID:
ENSAPLG00000014267
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025096
140558001 - 140581596
23596
ENSAPLT00000014889
140558001 - 140581596
23596
ENSAPLT00000035201
140558001 - 140581596
23596
ENSAPLT00000027878
140558001 - 140581596
23596