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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140588783_140589738_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140588783 - 140589738
Intron Length:
956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACG
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
AGTTTGTTAGTT
Flanking Amino Acid:
ILQNEIEELKSQMSRMMSDV
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
36.9
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
80.7
0.69
0.9
77.4
41.2
Minor 5ss
35.4
-1.7
2.7
43.2
43.8
Minor BPS
48.6
-0
2.2
70.48
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014357
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014958
140588540 - 140596926
8387