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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140589860_140591212_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140589860 - 140591212
Intron Length:
1353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTACAAATC
5'SS Class:
major
3'SS Sequence:
AATACTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
AAGATGTAAAAA
Flanking Amino Acid:
AELRTELELLRSEMICRVEE
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.2
0.36
1.1
63.7
40.8
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
73.8
0.53
0.9
70.6
40.1
Minor 5ss
36.8
-1.5
3.4
52.4
44.6
Minor BPS
38.7
-0.8
2.2
44.29
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014357
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014958
140588540 - 140596926
8387