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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140591376_140593062_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140591376 - 140593062
Intron Length:
1687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TTGACTTCATCT
Flanking Amino Acid:
EYSQIPCSNAGCTIQVERRN
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.8
79.3
28.9
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
79.4
0.66
0.9
77.2
37
Minor 5ss
30.7
-2.2
2.6
33.5
35.6
Minor BPS
51.3
0.12
1.9
72.81
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014357
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014958
140588540 - 140596926
8387