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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140593203_140594236_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140593203 - 140594236
Intron Length:
1034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACAAT
5'SS Class:
major
3'SS Sequence:
CTTTTGTGCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
GATTTAAGAACA
Flanking Amino Acid:
IDVSVLRPLYRYMKNDLNRL
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
73
37.8
Major BPS
76.8
0.67
1
66
40.9
Major PPT
72
0.5
0.9
68.1
37.6
Minor 5ss
46.5
-0.4
2.8
65.5
45.8
Minor BPS
46.2
-0.2
1.9
60.8
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014357
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014958
140588540 - 140596926
8387