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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140594463_140595165_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
140594463 - 140595165
Intron Length:
703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
GTTGTTTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
GTTGTTTTAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
73.6
0.53
1
69.9
40.3
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
65.8
0.49
1.3
70.9
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014357
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014958
140588540 - 140596926
8387