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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140595284_140596829_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
140595284 - 140596829
Intron Length:
1546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTCTTTCTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
82.3
31.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
90.1
0.9
0.7
84.7
29.5
Minor 5ss
44.4
-0.6
3.4
64.7
41
Minor BPS
62.4
0.47
1.6
79.49
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014357
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014958
140588540 - 140596926
8387