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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140601595_140602293_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140601595 - 140602293
Intron Length:
699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CTATCCTGATCT
Flanking Amino Acid:
EVDQDMKLKEINEQQGSDSE
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
91.7
0.94
0.6
87.8
22.3
Minor 5ss
34.9
-1.7
3.3
47.4
48
Minor BPS
61
0.42
1.8
77.92
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014366
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015014
140601271 - 140653844
52574