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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140635515_140638478_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140635515 - 140638478
Intron Length:
2964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
ATTTTTTTACTT
Flanking Amino Acid:
CKPRHDPNASNSLVMPRPNA
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
76.7
33.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
78.4
0.64
1
76.8
36.7
Minor 5ss
43
-0.8
3.3
59.1
40
Minor BPS
65.6
0.57
1.5
81.14
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014366
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015014
140601271 - 140653844
52574