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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140638642_140639326_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140638642 - 140639326
Intron Length:
685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATCTTTTAAAA
Flanking Amino Acid:
VFLYECVMGMRVSGRFGAIL
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
90
0.9
0.7
84.5
30.1
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
64.3
0.44
1.3
71.01
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014366
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015014
140601271 - 140653844
52574