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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140644683_140645220_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140644683 - 140645220
Intron Length:
538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTAGTATT
5'SS Class:
major
3'SS Sequence:
TCTGTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
AAATGCATAACT
Flanking Amino Acid:
LPCERRIILTGTPIQNDLQE
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.1
84.7
32.3
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
85
0.79
0.8
76.7
37.4
Minor 5ss
38.2
-1.3
2.8
50.3
39.9
Minor BPS
54
0.2
2
73.97
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014366
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015014
140601271 - 140653844
52574