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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140645361_140645946_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140645361 - 140645946
Intron Length:
586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATAGTAT
5'SS Class:
major
3'SS Sequence:
TTTGTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TGAACATTAATT
Flanking Amino Acid:
VRSREPSATMEEKELGEKRA
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1
63.4
37
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
86.6
0.82
0.7
85.5
29.2
Minor 5ss
44
-0.7
3.3
60.4
46.7
Minor BPS
62.2
0.46
1.6
76.21
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014366
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015014
140601271 - 140653844
52574