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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140647681_140649913_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140647681 - 140649913
Intron Length:
2233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCGCTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
TTCCGCTTGACA
Flanking Amino Acid:
AAIHELNSSERVVLVSNYTQ
Intron Amino Acid Position:
669

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
72.3
0.5
1
67.9
37.7
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
60.4
0.32
1.8
71.93
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014366
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015014
140601271 - 140653844
52574