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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140650176_140651510_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140650176 - 140651510
Intron Length:
1335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGATAC
5'SS Class:
major
3'SS Sequence:
TTCCTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGCTTTTCATCT
Flanking Amino Acid:
IDWNPATDIQAMARVWRDGQ
Intron Amino Acid Position:
757

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.3
64.7
36.1
Major BPS
100
1.24
0.5
100
0
Major PPT
89.3
0.88
0.6
88.2
21.6
Minor 5ss
39.7
-1.2
2.9
50.4
46.2
Minor BPS
49.3
0.03
1.8
68.03
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014366
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015014
140601271 - 140653844
52574