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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140652083_140653579_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140652083 - 140653579
Intron Length:
1497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
ATCATTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTCTCTGATT
Flanking Amino Acid:
CDCMGNKDHQNPSSEKPSAS
Intron Amino Acid Position:
846

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
81.1
26.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
83.4
0.75
0.8
80.8
36
Minor 5ss
41
-1
2.9
52.8
38.5
Minor BPS
67.9
0.65
1.6
87.59
31.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014366
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015014
140601271 - 140653844
52574