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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140686697_140689820_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140686697 - 140689820
Intron Length:
3124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTCCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CATTTCTGATTT
Flanking Amino Acid:
SIDSDCEVLGEDTYERTLMV
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.3
40.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
89.4
0.89
0.7
81.6
35.5
Minor 5ss
35.5
-1.7
3.2
50.7
45.7
Minor BPS
52
0.14
1.7
69.34
42

Associated Gene:

Gene:
GEM
Ensembl Gene ID:
ENSAPLG00000014490
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015110
140686354 - 140693466
7113