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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140689898_140690380_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140689898 - 140690380
Intron Length:
483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTTA
5'SS Class:
major
3'SS Sequence:
TTTGTTTGAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATCAT
U12 Branch Point Sequence:
TTTGTTTGAACA
Flanking Amino Acid:
IILLDMWDNKREGEWIRDHC
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
77.1
34.2
Major BPS
73
0.57
1.2
74
41.2
Major PPT
76
0.59
1
73.3
40.9
Minor 5ss
42.8
-0.8
3
58.7
45.7
Minor BPS
63.9
0.43
1.5
75.34
36.3

Associated Gene:

Gene:
GEM
Ensembl Gene ID:
ENSAPLG00000014490
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015110
140686354 - 140693466
7113