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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140690586_140692207_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140690586 - 140692207
Intron Length:
1622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TGCGATTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATCTCATGACAT
Flanking Amino Acid:
LVRCREVSVAEGRACAVVFD
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
75.6
0.58
1
68.8
41.7
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
45.6
-0.2
2
65.98
44

Associated Gene:

Gene:
GEM
Ensembl Gene ID:
ENSAPLG00000014490
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015110
140686354 - 140693466
7113