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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140718144_140718689_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140718144 - 140718689
Intron Length:
546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCAGC
5'SS Class:
major
3'SS Sequence:
TTCCCTATACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTTCCCTATACT
Flanking Amino Acid:
EGAGVRPIYQFISETPVIFR
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
69
42.1
Major BPS
76.8
0.67
1
66
40.9
Major PPT
69.4
0.44
0.9
63.5
36.8
Minor 5ss
39.8
-1.1
2.8
52.6
44.1
Minor BPS
62.7
0.48
2
86.01
39.8

Associated Gene:

Gene:
CDH17
Ensembl Gene ID:
ENSAPLG00000014890
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015542
140715438 - 140737106
21669