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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140721460_140722011_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140721460 - 140722011
Intron Length:
552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCAA
5'SS Class:
strong_major
3'SS Sequence:
GCTCTGTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCTGCTTCATTT
Flanking Amino Acid:
TTGAISPSRTGSFYLDPQKQ
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
75.9
35.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
70.8
0.47
0.9
61.8
40
Minor 5ss
39.6
-1.2
2.8
49.3
46.9
Minor BPS
48.3
-0
1.9
67.22
44.6

Associated Gene:

Gene:
CDH17
Ensembl Gene ID:
ENSAPLG00000014890
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028979
140715438 - 140737106
21669
ENSAPLT00000015542
140715438 - 140737106
21669