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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140723596_140724397_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140723596 - 140724397
Intron Length:
802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
ACCCTCTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ACACATCTAATC
Flanking Amino Acid:
EPLDREKKDSYLFYAVTKDS
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
78.7
0.65
0.8
72.5
31.5
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
44.1
-0.4
1.7
48.8
34.6

Associated Gene:

Gene:
CDH17
Ensembl Gene ID:
ENSAPLG00000014890
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028979
140715438 - 140737106
21669
ENSAPLT00000015542
140715438 - 140737106
21669