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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140724549_140725279_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140724549 - 140725279
Intron Length:
731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTCTGTCACA
Flanking Amino Acid:
VFEVQENEGGGSTIGTLHAT
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
84.3
0.77
0.8
79.7
32.4
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
55.6
0.17
2.4
78.6
38.6

Associated Gene:

Gene:
CDH17
Ensembl Gene ID:
ENSAPLG00000014890
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028979
140715438 - 140737106
21669
ENSAPLT00000015542
140715438 - 140737106
21669