About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140727806_140728939_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140727806 - 140728939
Intron Length:
1134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATAGA
5'SS Class:
strong_major
3'SS Sequence:
CTGATTTACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTGATTT
Flanking Amino Acid:
TNRGFVKINKALDFETDKVH
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
76.5
34.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
71.1
0.48
1
69.4
40.7
Minor 5ss
29
-2.4
2.7
33.7
41.6
Minor BPS
64
0.52
1.7
84.31
36.7

Associated Gene:

Gene:
CDH17
Ensembl Gene ID:
ENSAPLG00000014890
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028979
140715438 - 140737106
21669
ENSAPLT00000015542
140715438 - 140737106
21669