Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140729185_140731130_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

140729185 - 140731130

Intron Length:

1946

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAAAAG

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTTCCAAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATAACAT

U12 Branch Point Sequence:

TTTTCCCTATTT

Flanking Amino Acid:

EAYDPEGDTVRYSLEGDVKK

Intron Amino Acid Position:

597

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.75

0.9

36.4

Major BPS

62.2

0.3

1.1

69.4

35.8

Major PPT

73.1

0.52

74.6

27.9

Minor 5ss

32.2

-2

39.4

46.1

Minor BPS

65.9

0.58

1.9

88.76

36.3

Associated Gene:

Gene:

CDH17

Ensembl Gene ID:

ENSAPLG00000014890

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028979

140715438 - 140737106

21669

ENSAPLT00000015542

140715438 - 140737106

21669