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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140731262_140732482_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140731262 - 140732482
Intron Length:
1221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTAAACTCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGACTTTTAACT
Flanking Amino Acid:
YKVDIVATETKNAAQRSKIP
Intron Amino Acid Position:
641

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
80.7
33.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
73.6
0.53
1
65.9
40.3
Minor 5ss
42.8
-0.8
2.9
58
40.7
Minor BPS
69.6
0.69
1.2
78.8
36.9

Associated Gene:

Gene:
CDH17
Ensembl Gene ID:
ENSAPLG00000014890
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028979
140715438 - 140737106
21669
ENSAPLT00000015542
140715438 - 140737106
21669