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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140733607_140733729_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140733607 - 140733729
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTCTTGTTAACG
Flanking Amino Acid:
PSLENKVNLEVNVCQCSSEK
Intron Amino Acid Position:
759

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71
35.7
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
95.4
1.02
0.5
91.9
18.9
Minor 5ss
50.9
0.03
2.4
66.9
44.7
Minor BPS
61.3
0.21
2.1
70.32
43.3

Associated Gene:

Gene:
CDH17
Ensembl Gene ID:
ENSAPLG00000014890
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015542
140715438 - 140737106
21669
ENSAPLT00000028979
140715438 - 140737106
21669