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Intron Name: Anas_platyrhynchos_platyrhynchos_2_140802615_140805508_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

140802615 - 140805508

Intron Length:

2894

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTATGTATC

5'SS Class:

strong_major

3'SS Sequence:

TCTTGTATTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTGTAT

U12 Branch Point Sequence:

TTTTCTTGTATT

Flanking Amino Acid:

MCVCPGPRRIAIPVRSSRLP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

78.3

36.1

Major BPS

59.2

0.23

1.4

61.1

45.5

Major PPT

84.1

0.77

0.8

81.4

34.9

Minor 5ss

46.9

-0.3

2.5

63.7

40.8

Minor BPS

62.7

0.48

1.8

84.45

36.2

Associated Gene:

Gene:

PDP1

Ensembl Gene ID:

ENSAPLG00000001130

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021369

140800088 - 140805543

5456

ENSAPLT00000001117

140800963 - 140806116

5154