Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140805544_140805898_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

140805544 - 140805898

Intron Length:

355

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGCAG

5'SS Class:

strong_major

3'SS Sequence:

CTTGTTGTGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTGGAT

U12 Branch Point Sequence:

CTTGTTGTGACA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

65.6

41.7

Major BPS

56.3

0.16

1.5

57.1

49.4

Major PPT

71.9

0.49

1.1

67.9

42.5

Minor 5ss

24.7

-2.9

28.6

43.8

Minor BPS

46.5

-0.2

2.1

60.48

40.6

Associated Gene:

Gene:

PDP1

Ensembl Gene ID:

ENSAPLG00000001130

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001117

140800963 - 140806116

5154