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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140832348_140832712_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140832348 - 140832712
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCAATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AGCTTCTCAATT
Flanking Amino Acid:
TGIYWLVFFKAQQFVSVFLP
Intron Amino Acid Position:
676

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
88.1
25.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
80.3
0.68
0.9
73.7
34.5
Minor 5ss
40.3
-1.1
3.4
58.5
40.4
Minor BPS
59.5
0.38
1.5
70.89
40.4

Associated Gene:

Gene:
TMEM67
Ensembl Gene ID:
ENSAPLG00000001214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001287
140822352 - 140849679
27328