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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140832812_140833304_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140832812 - 140833304
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAATG
5'SS Class:
major
3'SS Sequence:
TTTATAATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
GCTTTTATAATT
Flanking Amino Acid:
RTGSSVIDLQTVLKFLLFYA
Intron Amino Acid Position:
643

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
70.5
39.5
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
81.2
0.7
0.9
75
38.6
Minor 5ss
42.5
-0.8
3
57.1
47.2
Minor BPS
58
0.33
1.6
72.64
38.9

Associated Gene:

Gene:
TMEM67
Ensembl Gene ID:
ENSAPLG00000001214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001287
140822352 - 140849679
27328