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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140833404_140833497_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140833404 - 140833497
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTTGT
5'SS Class:
major
3'SS Sequence:
CCATTCTCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
ATACCTACAAAT
Flanking Amino Acid:
NQSEAQIQTDITLGVLGGLA
Intron Amino Acid Position:
610

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.3
78.8
38.3
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
79.8
0.67
0.8
77
31.5
Minor 5ss
43.3
-0.7
2.8
57.5
40.5
Minor BPS
45.5
-0.2
1.8
63.99
39.4

Associated Gene:

Gene:
TMEM67
Ensembl Gene ID:
ENSAPLG00000001214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001287
140822352 - 140849679
27328