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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140833994_140835264_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140833994 - 140835264
Intron Length:
1271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTGTTTTTAAAT
Flanking Amino Acid:
VIRVASKISISVRLVSHTQR
Intron Amino Acid Position:
555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83
0.74
0.9
77.4
36.8
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
65.8
0.57
1.4
76.07
41.1

Associated Gene:

Gene:
TMEM67
Ensembl Gene ID:
ENSAPLG00000001214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001287
140822352 - 140849679
27328