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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140836769_140838149_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140836769 - 140838149
Intron Length:
1381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
ATGTCTTGTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATTACCCTAATC
Flanking Amino Acid:
WQSLEGGTLQLCPDTQTKLN
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
75.6
0.58
1
73.6
41.2
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
63.9
0.42
1.7
74.69
35.4

Associated Gene:

Gene:
TMEM67
Ensembl Gene ID:
ENSAPLG00000001214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001287
140822352 - 140849679
27328