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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140840746_140840864_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140840746 - 140840864
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCAATTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
GTTTCTTTAGAA
Flanking Amino Acid:
RLGIVHSIAYWRHNLPWLYY
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
80.1
28.4
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
82.8
0.74
0.9
80.5
36.7
Minor 5ss
39.5
-1.2
2.9
49.4
41.4
Minor BPS
62.8
0.4
1.7
73.57
38

Associated Gene:

Gene:
TMEM67
Ensembl Gene ID:
ENSAPLG00000001214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001287
140822352 - 140849679
27328