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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140841020_140842154_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140841020 - 140842154
Intron Length:
1135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCACTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATAAA
U12 Branch Point Sequence:
TGTTTCTCCACT
Flanking Amino Acid:
NLQASASACWLHSNLTACQA
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
78.3
32.5
Major BPS
66
0.4
1.1
66.5
36.3
Major PPT
80.1
0.68
0.8
73.7
29.8
Minor 5ss
38.9
-1.3
2.9
44.3
43.6
Minor BPS
58.1
0.34
2
80.64
41.1

Associated Gene:

Gene:
TMEM67
Ensembl Gene ID:
ENSAPLG00000001214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001287
140822352 - 140849679
27328