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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140842218_140843179_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140842218 - 140843179
Intron Length:
962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTATGTATG
5'SS Class:
major
3'SS Sequence:
TCCTTATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CATTCCTTATTT
Flanking Amino Acid:
AIATVRFGQIGVTLTSAWFL
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1
69.9
40.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
85.3
0.79
0.8
79.7
31.2
Minor 5ss
47.3
-0.3
2.5
61.2
38.5
Minor BPS
69.5
0.69
1.6
80.93
41.2

Associated Gene:

Gene:
TMEM67
Ensembl Gene ID:
ENSAPLG00000001214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001287
140822352 - 140849679
27328