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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140843421_140843967_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140843421 - 140843967
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTGCTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TACGCTTTAAGT
Flanking Amino Acid:
SFSASDVLGNRCVRCEQTFI
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
74.1
0.54
0.9
68.9
37.2
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
58.9
0.36
1.8
72.26
45

Associated Gene:

Gene:
TMEM67
Ensembl Gene ID:
ENSAPLG00000001214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001287
140822352 - 140849679
27328