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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140844068_140845531_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140844068 - 140845531
Intron Length:
1464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCACTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATACTAT
U12 Branch Point Sequence:
TTCTTCTCCACT
Flanking Amino Acid:
KCKCLINEVLVERSVDGVLL
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
53.3
0.08
1.3
52.9
42.3
Major PPT
71.4
0.48
0.8
70.4
29.5
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
57.1
0.3
2
79.4
43

Associated Gene:

Gene:
TMEM67
Ensembl Gene ID:
ENSAPLG00000001214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001287
140822352 - 140849679
27328