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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140847219_140849204_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140847219 - 140849204
Intron Length:
1986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCGAG
5'SS Class:
major
3'SS Sequence:
TTCTTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TGTAGATTAAAA
Flanking Amino Acid:
CGQNQAPSAGGSSCECQPGF
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
59.7
41.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
30.7
-2.2
3.3
38.1
46.8
Minor BPS
47.6
-0.1
2.1
63.88
41.6

Associated Gene:

Gene:
TMEM67
Ensembl Gene ID:
ENSAPLG00000001214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001287
140822352 - 140849679
27328