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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1408576_1409044_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1408576 - 1409044
Intron Length:
469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGGAGA
5'SS Class:
major
3'SS Sequence:
TTTCTCTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TTTCTCTCCTCA
Flanking Amino Acid:
MMTLRTKLSSQEI
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
60.9
45.3
Major BPS
62
0.3
1
62.3
30.4
Major PPT
86.2
0.81
0.6
85
22.5
Minor 5ss
30.7
-2.2
3.4
39.3
46.3
Minor BPS
38
-0.9
3.6
64.59
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017641
1400176 - 1410617
10442