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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140862131_140866200_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140862131 - 140866200
Intron Length:
4070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCCTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAGAT
U12 Branch Point Sequence:
TTTTGTTGAATT
Flanking Amino Acid:
SLKSSLKTVQISNSMPRKEE
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
70.4
0.51
1
66.8
39.9
Major PPT
79.9
0.67
0.7
78.5
29.6
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
63
0.49
1.9
84.4
36.8

Associated Gene:

Gene:
FAM92A
Ensembl Gene ID:
ENSAPLG00000015090
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015725
140862047 - 140885048
23002
ENSAPLT00000024700
140861317 - 140880310
18994
ENSAPLT00000021059
140861317 - 140879454
18138
ENSAPLT00000015728
140862047 - 140879454
17408