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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140866321_140867571_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140866321 - 140867571
Intron Length:
1251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCATTTGAACA
Flanking Amino Acid:
QNIDENEDLEVFRSSLYPPD
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
84.3
26.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
72
0.5
1
69
40.7
Minor 5ss
34
-1.8
3.5
46.9
48.4
Minor BPS
58.9
0.28
1.5
68.23
38.3

Associated Gene:

Gene:
FAM92A
Ensembl Gene ID:
ENSAPLG00000015090
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015725
140862047 - 140885048
23002
ENSAPLT00000024700
140861317 - 140880310
18994
ENSAPLT00000021059
140861317 - 140879454
18138
ENSAPLT00000015728
140862047 - 140879454
17408