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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14086635_14089620_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14086635 - 14089620
Intron Length:
2986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
CGTTGTCTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
ATTCCCTCATTC
Flanking Amino Acid:
GLENATNFSLDDMVKLVEVS
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.1
34.3
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
75.1
0.56
0.9
68.2
37.6
Minor 5ss
41.8
-0.9
2.8
49.1
41.3
Minor BPS
52.9
0.07
1.8
66.85
38.7

Associated Gene:

Gene:
PARD3
Ensembl Gene ID:
ENSAPLG00000014767
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015447
13864772 - 14305998
441227
ENSAPLT00000047719
13864772 - 14307028
442257
ENSAPLT00000003606
13864772 - 14305998
441227
ENSAPLT00000041564
13864772 - 14307028
442257
ENSAPLT00000003604
13864772 - 14305998
441227
ENSAPLT00000038237
13864772 - 14307028
442257
ENSAPLT00000019870
13864772 - 14307028
442257