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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140868670_140872835_R

Intron Information:

Intron Rank:
4
Intron Class:
minor-like
Intron Phase:
0
Intron Coordinates:
140868670 - 140872835
Intron Length:
4166

Sequence Information:

Terminal Dinucleotides:
GT-TT
5'SS Sequence:
ATT|GTATCCTGC
5'SS Class:
minor
3'SS Sequence:
CTTTGTGTTCCTT|T
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
AAATACAGAACT
Flanking Amino Acid:
QRNPSDRHIIYQAESELQRA
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
48.7
-0
1.2
42.4
39.8
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
27
-1.3
4.2
57.2
47.4
Minor 5ss
79.3
0.99
1.6
81.4
32.6
Minor BPS
48.4
-0
1.9
68.49
40.9

Associated Gene:

Gene:
FAM92A
Ensembl Gene ID:
ENSAPLG00000015090
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015728
140862047 - 140879454
17408
ENSAPLT00000015725
140862047 - 140885048
23002
ENSAPLT00000024700
140861317 - 140880310
18994
ENSAPLT00000021059
140861317 - 140879454
18138